PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G341000.1.p
Common NamePRUPE_ppa022417mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 679aa    MW: 76474.7 Da    PI: 6.6806
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G341000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.2e-15151210266
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                         W+++e laL+++r+ m++++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ 
  Prupe.6G341000.1.p 151 WSNDELLALLRIRSTMDNWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNINF 210
                         ********************998.....9*******************************99875 PP

2trihelix97.41.3e-30506595186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+++evlaLi++r ++ ++ ++++      k+plWe++s+ m e+g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Prupe.6G341000.1.p 506 RWPRDEVLALINLRCSLFNNGSADQdkngvVKAPLWERISQGMLEKGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 595
                         8********************9865556669********************************************8.9999********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5147204IPR001005SANT/Myb domain
PfamPF138374.9E-10149211No hitNo description
PROSITE profilePS500906.377150202IPR017877Myb-like domain
SMARTSM007170.24503570IPR001005SANT/Myb domain
PfamPF138371.1E-18505595No hitNo description
CDDcd122033.77E-24505575No hitNo description
PROSITE profilePS500906.47506568IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MFDGVPAEQL HQFIAASRTS LPLPLPLPLP LSSFPAALHA SSSPPPNINT FSAAAAAAAA  60
PFDPNYNNNP SHHHLHHHHH HHQLLLQPQP QPQPHQHQLL NNPGVQLHRQ SATPKNHEEK  120
KESNLVSINN NLEIERERSS SISQVPISDP WSNDELLALL RIRSTMDNWF PEFTWEHVSR  180
KLAELGFKRS AEKCKEKFEE ESRYFNNINF TKNYRFLSDL EELCHGGDDQ NPDQAAAGAE  240
NKNQQKVEKP SNNEGDEDSR CQILDEDSTR NETVAGSKEF DDQDKEKEVV ERTKSNVVRK  300
RKRQRRFEML KGFCEDIVNR MMAQQEEMHS KLLEDMVKRS EEKLAREEAW KKQEMDRMNK  360
ELEIMAHEQA IAGDRQTTII KFLKKFASSS SSSTSSEPSP DHDHRTNSSS LINHARNPNH  420
PTCSQEKEPA SSTISQKPGT SSHTPNNPST PISLTESLAP QSPSSSTLAP TPTIPKVPIP  480
PENPSSDHLN TQNLTSNEDK QDLGKRWPRD EVLALINLRC SLFNNGSADQ DKNGVVKAPL  540
WERISQGMLE KGYKRSAKRC KEKWENINKY FRKTKDVNKK RSLDSRTCPY FHQLSTLYNQ  600
GILVSPSDHI QGPDDQTRSA SPENQSLASP VVPHTGLDSS DQGRSSADDD LSKHNIIGEG  660
EKNNTVQPVP AAAFDFEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299304KRKRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208598.10.0hypothetical protein PRUPE_ppa022417mg
SwissprotQ8H1811e-106GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLM5W7S80.0M5W7S8_PRUPE; Uncharacterized protein
STRINGPOPTR_0013s03670.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-101Trihelix family protein